Overview
We characterise the adaptive immune response and predict which peptides the immune system will see.
Salient features
- Clonotype assembly and tracking
- Repertoire diversity and similarity metrics
- MHC binding and epitope prediction
Analyses we offer
Immune system analysis
Characterises immune repertoires and responses from sequencing data.
Methods: immunarch, mixcr, mhcflurry.
Rep-seq analysis
Assembles and tracks B-cell and T-cell receptor clonotypes from repertoire sequencing.
Methods: mixcr, tcrdist3, immunarch.
Peptide prediction
Predicts MHC-binding and bioactive peptides for vaccine and therapeutic design.
Methods: mhcflurry, modlAMP.
What you receive
- A written report with methods, parameters and interpretation
- Processed data tables and publication-quality figures
- Scripts and settings so every result can be reproduced
Not sure which analysis fits your data? Contact us and we will advise.