Overview
We combine genomic and case data to understand how infections spread and how fast.
Salient features
- Reproduction-number estimation
- Phylodynamic and lineage analysis
- Clear reports for decision makers
Analyses we offer
Epidemiological analysis
Estimates reproduction numbers and growth rates from case and genomic data, and builds transmission trees.
Methods: EpiNow2, EpiEstim, augur.
Viral genomics & lineage assignment
Assigns viral sequences to lineages, calls mutations and checks quality.
Methods: pangolin, nextclade.
What you receive
- A written report with methods, parameters and interpretation
- Processed data tables and publication-quality figures
- Scripts and settings so every result can be reproduced
Not sure which analysis fits your data? Contact us and we will advise.