Overview
Reliable pipelines need organised data and automation. We set up the plumbing so analyses can be repeated and scaled.
Salient features
- Automated retrieval from public repositories
- Workflow engines for cluster and cloud
- Versioned, documented pipelines
Analyses we offer
Database management
Retrieves public data and organises it in structured, queryable databases.
Methods: gget, sra-tools, biosql.
Bioinformatics workflow management
Packages analyses into automated, portable pipelines that scale to clusters and the cloud.
Methods: nextflow, snakemake, galaxy.
What you receive
- A written report with methods, parameters and interpretation
- Processed data tables and publication-quality figures
- Scripts and settings so every result can be reproduced
Not sure which analysis fits your data? Contact us and we will advise.